GETTING STARTED IN BIOSCIENCES
Organic Chemistry
This lecture series will cover:
-
Chemical bonds of carbon, hybridisation, spatial orientation, concept of functional groups.
-
Reactions and properties of alkanes, alkenes, haloalkanes, alkanols and amines, alkanones/alkanals, alkanoic acids esters/amides, and aromatic compounds
Alkanes are straight or branched chain hydrocarbons with only single covalent bonds between the carbon atoms. The general formula is CnH(2n+2) where n corresponds to the number of carbon atoms in the molecule.
​
Stereoisomers are isomers whose atoms are connected in the same order, but their spatial arrangement differs. These can be conformational, geometric or optical isomers.
​
A carbon compound is described as chiral if at least one carbon is bonded to four different atoms of groups. This carbon is a stereocentre. Enantiomers are pairs of chiral molecules.
​
Reactions of haloalkanes:
-
Nucleophilic substitution
-
The SN1 mechanism is where the leaving group goes first and creates a carbocation which the nucleophile then joins. This is heterolytic dissociation
-
The SN2 mechanism is when the leaving group goes and the nucleophile joins at the same time. This is direct displacement
-
-
Elimination - The nucleophile acts as a base to form an alkene
​
​
Naming alkenes:
-
Select the longest continuous chain that contains the double bond
-
Name the parent compound as you would an alkane but change ending to ‘ene’
-
Number the carbon chain of parent starting at end nearer double bond
-
Use the smaller number to indicate position of the double bond
-
Branch chains and other groups are treated as in naming alkanes
Constitutional Isomers are compounds with the same molecular formula, but different bonding patterns and atomic organisation.
-
Also called structural isomers
-
Alkenes can form many constitutional isomers
Stereoisomers are compounds with the same molecular formula, molecular bonds are in the same place, only spatial arrangement differs.
-
Geometric isomers are a specific type where atoms are connected in the same order but have spatially different arrangements
o Cis-Trans isomers when each carbon is attached to two different groups
o E-Z isomers when all four groups are different (sorted by atomic number)
Benzene is an aromatic compound (a cyclic hydrocarbon) with 6 electrons in pure p orbitals which overlap to create a delocalised ring of electrons above and below the carbon plane.
​
Reactions of benzene:
-
Electrophilic substitution
-
Specific types of electrophilic substitution are halogenation, nitration and sulfonation
​
An alcohol has the functional group of a hydroxyl (-OH). When this is attached to an alkane it forms an alkanol.
Reactions of alkanols:
-
Oxidation
-
Nucleophilic substitutions
-
Elimination reactions to form an alkene and water



